InterProScan software combines several protein motifs/domains search tools together. It allows users to scan protein sequences at one time against several signature databases including Prosite, PRINTS, PFAM, P roDom, Smart, TIGRFAMs, SignlP, Trans memberane etc., and also gives GO annotation.
To run this software interactively in a Linux environment run the commands:
module load interproscan iprscan -cli -i <seqfile> -o <output file>
For documentation, refer to the InterProScan homepage, or run the command
iprscan -cli -help
Other InterProScan programs are available in the directory
where VER is the version of InterProScan you are using.
*New* Version 5.0 Available
Version 5.0 is now available through the interposcan/5.0 module. The new version is significantly different from previous versions. Please refer to the developer's migration guide to get started.
Note that v5.0 replaces the iprscan command with interproscan.sh.