InterProscan - Protein Motif Search Tools

Search Software

InterProScan software combines several protein motifs/domains search tools together. It allows users to scan protein sequences at one time against several signature databases including Prosite, PRINTS, PFAM, P roDom, Smart, TIGRFAMs, SignlP, Trans memberane etc., and also gives GO annotation.
 
SW Documentation: 
To run this software interactively in a Linux environment run the commands:
module load interproscan
iprscan -cli -i <seqfile> -o <output file>
For documentation, refer to the InterProScan homepage, or run the command
iprscan -cli -help
Other InterProScan programs are available in the directory
/soft/interproscan/VER/bin
where VER is the version of InterProScan you are using.
 
*New* Version 5.0 Available
Version 5.0 is now available through the interposcan/5.0 module. The new version is significantly different from previous versions. Please refer to the developer's migration guide to get started.
 
Note that v5.0 replaces the iprscan command with interproscan.sh.
 
Additional Information
Short Name: 
interproscan
SW Module: 
interproscan
Service Level: 
Primary
SW Category: