last
Software Description
LAST is designed for moderately large data (e.g. genomes, DNA reads, proteomes). It\'s especially good at:
Finding rearrangements and recombinations: we believe last-split does that more rigorously than anything else.
Finding DNA-versus-protein related regions, especially protein fossils (but introns are not considered).
Unusual data, e.g. AT-rich DNA, because we can fit parameters to the data and calculate significance . Sensitive DNA-DNA search, due to fit ting , sensitive seeding , and calculating significance . It can also: indicate the confidence/uncertainty of each column in an alignment, and use sequence quality data in a rigorous fashion.
Info
Module Name
last
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
LAST is designed for moderately large data (e.g. genomes, DNA reads, proteomes). It\'s especially good at:
Finding rearrangements and recombinations: we believe last-split does that more rigorously than anything else.
Finding DNA-versus-protein related regions, especially protein fossils (but introns are not considered).
Unusual data, e.g. AT-rich DNA, because we can fit parameters to the data and calculate significance . Sensitive DNA-DNA search, due to fit ting , sensitive seeding , and calculating significance . It can also: indicate the confidence/uncertainty of each column in an alignment, and use sequence quality data in a rigorous fashion.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load last
Depending on where you are working, there may be more than one version of last available. To see which modules are available for loading you can run:
module avail last
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