libsequence
Software Description
libsequence is a C++ library designed to aid writing applications for genomics and evolutionary genetics. A large amount of the library is dedicated to the analysis of \"single nucleotide polymorphism\", or SNP data. The library is intended to be viewed as a \"BioC++\" akin to the bioperl project, although the scope of libsequence is limited in comparison. Much of the bioperl project concerns parsing the output of various bioinformatics programs, and the management of databases of biological data. perl is a good language for such things, and libsequence tries not to re-invent the wheel. Rather, the focus is on biological computation, such as the analysis of SNP data and sequence divergence, and the analysis of data generated from coalescent simulation.
Info
Module Name
libsequence
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
libsequence is a C++ library designed to aid writing applications for genomics and evolutionary genetics. A large amount of the library is dedicated to the analysis of \"single nucleotide polymorphism\", or SNP data. The library is intended to be viewed as a \"BioC++\" akin to the bioperl project, although the scope of libsequence is limited in comparison. Much of the bioperl project concerns parsing the output of various bioinformatics programs, and the management of databases of biological data. perl is a good language for such things, and libsequence tries not to re-invent the wheel. Rather, the focus is on biological computation, such as the analysis of SNP data and sequence divergence, and the analysis of data generated from coalescent simulation.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load libsequence
Depending on where you are working, there may be more than one version of libsequence available. To see which modules are available for loading you can run:
module avail libsequence
Agate Modules
Default
1.8.0
Other Modules
1.7.3, 1.8.0, 1.8.0_dynamic
Mangi Modules
Default
1.8.0
Other Modules
1.7.3, 1.8.0, 1.8.0_dynamic
Mesabi Modules
Default
1.8.0
Other Modules
1.7.3, 1.8.0, 1.8.0_dynamic