LocaRNA (DISABLED - will be removed on 12/20/17)

Note: Due to lack of use, this software module has been disabled and will be removed from MSI systems on 12/20/17. If you need this software, please contact help@msi.umn.edu.

 

LocaRNA is a package of tools for producing fast and high-quality pairwise and multiple alignment of RNA sequences. It uses a complex RNA energy model for simultaneous folding and sequence/structure alignment of the RNAs. LocARNA performs global, sequence local, or even structurally local alignment of the molecules.

To run this software interactively in a Linux environment run the commands:

module load viennarna locarna
locarna

http://www.bioinf.uni-freiburg.de/Software/LocARNA/

 
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