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  • Categories: Genetics | Service Level: Minimal | SW Module: meme

    Meta-MEME is a software toolkit for building and using motif-based hidden Markov models of DNA and proteins. The input to Meta-MEME is a set of similar protein sequences, as well as a set of motif models discovered by MEME. Meta-MEME combines these models into a single, motif-based hidden Markov model and uses this model to search a sequence database for homologs.

    To run this software interactively in a Linux environment run the commands:

    module load meme
    mhmme

    The following executables are available:

    • 2html
    • draw-mhmm
    • fasta-get-markov
    • mcast
    • mhmm
    • mhmm2html
    • mhmme
    • mhmms
    • mhmmscan
    • transfac2meme

    Papers are available at: http://meme.sdsc.edu/meme/mhmm-papers.html

    Home Page:http://meme.sdsc.edu/meme/