Minnesota Supercomputing Institute
3.23.64bit
3.23.CentOS7, 4.0.0.beta2, 3.23.64bit, 3.23, 3.23_20151022
Thursday, March 5, 2020
3.23
3.23, 3.23_20151022
Wednesday, December 7, 2016
MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. MUMmer can also align incomplete genomes- it can easily handle the 100s or 1000s of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
To run this software interactively in a Linux environment run the commands:
module load mummer mummer [options] input1.fasta input2.fasta > mummer.output
mummer -h
/soft/mummer/VER/bin
To run this software interactively in a Linux environment run the command(s): module load mummer mummer [options] input1.fasta input2.fasta > mummer.output For a complete list of options, please visit the MUMmer homepage, or use the command: mummer -h Other MUMmer programs may be found in the directory /soft/mummer/VER/bin where VER is the module version of MUMmer you are using.
Additional Information MUMmer Homepage MUMmer User Manual
#!/bin/bash #SBATCH --job-name="rfm_RunMUMMERTest_job" #SBATCH --ntasks=1 #SBATCH --ntasks-per-node=1 #SBATCH --output=rfm_RunMUMMERTest_job.out #SBATCH --error=rfm_RunMUMMERTest_job.err #SBATCH --time=0:10:0 #SBATCH -p small,large,ram256g,ram1t module load mummer/3.23 wget https://public.s3.msi.umn.edu/reframe/sw/mummer/ref.fa wget https://public.s3.msi.umn.edu/reframe/sw/mummer/query.fa mummer -L -maxmatch ref.fa query.fa