MUMmer

Search Software

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form.  MUMmer can also align incomplete genomes; it can easily handle the 100s or 1000s of contigs from a shotgun sequencing project, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
 
SW Documentation: 

To run this software interactively in a Linux environment run the commands:

module load mummer
mummer [options] input1.fasta input2.fasta > mummer.output
For a complete list of options, please visit the MUMmer homepage, or use the command:
mummer -h
Other MUMmer programs may be found in the directory
/soft/mummer/VER/bin
where VER is the module version of MUMmer you are using.
 
Additional Information
Short Name: 
mummer
SW Module: 
mummer
Service Level: 
Ancillary
SW Category: