MUSCLE

Search Software

MUSCLE, MUltiple Sequence Comparison by Log-Expectation, is a program for creating multiple alignments of amino acid or nucleotide sequences.  MUSCLE is claimed to achieve both better average accuracy and better speed than ClustalW2 or T-Coffee, depending on the chosen options.

SW Documentation: 

To run this software interactively in a Linux environment run the commands:

module load muscle
muscle -in <seqs.fa> -out <alignedseqs.fa>

For documentation, refer to MUSCLE Homepage.

 
Additional Information

 

Short Name: 
muscle---program
SW Module: 
muscle
Service Level: 
Primary
SW Category: