nanocount
Software Description
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads.
Info
Module Name
nanocount
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load nanocount
Depending on where you are working, there may be more than one version of nanocount available. To see which modules are available for loading you can run:
module avail nanocount
Agate Modules
Default
0.24.post1
Other Modules
0.24.post1
Mangi Modules
Default
0.24.post1
Other Modules
0.24.post1
Mesabi Modules
Default
0.24.post1
Other Modules
0.24.post1