Minnesota Supercomputing Institute
750
Monday, November 22, 2021
MSI has access to two seats for NONMEM available on Mesabi and Mangi, enforced by the Slurm licensing plugin. You can request one of these licenses for your job by adding the following sbatch directive to your job script:
#SBATCH -L nonmem@slurmdb:1
Note that you should only request one license per job. If more jobs are submitted than available licenses, then the additional jobs will be queued to run when the licenses are available.
You can load NONMEM in an interactive Linux environment via:
module load nonmem
This also loads tools provided by PsN into your environment.
Note that NONMEM at MSI is only available for use within Slurm jobs on Mesabi and Mangi that request the appropriate license.
The following is an example script that runs the PsN `execute` program:
#!/bin/bash -l #SBATCH --time=00:30:00 #SBATCH --ntasks=4 #SBATCH --mem=10g #SBATCH --tmp=10g #SBATCH -L nonmem@slurmdb:1 #SBATCH --mail-type=ALL #SBATCH --mail-user=sample_email@umn.edu cd $SLURM_SUBMIT_DIR module load nonmem execute run1.mod