PacBio SMRT Analysis Portal

Software Summary

Mesabi

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Other Modules Available: 
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Mesabi K40

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Mangi

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Mangi v100

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NICE

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Support Level: 
Primary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Data Visualization
Software Description

The PacBio Single Molecule Real Time (SMRT) analysis portal is an easy-to-use web-based platform for analyzing 3rd generation sequencing data generated from the PacBio SMRT platform.  Currently, workflows for microbial whole genome assembly, resequencing analysis, transcriptome analysis and various data processing steps are available through the portal.  For more information on the analysis portal itself, see http://www.pacb.com/devnet/and the tutorial materials. The software must be run from a browser in the MSI network.  This can be achieved via connection through the NICE interface, or by working directly in one of the MSI laboratories. Due to limits in RAM the portal does not run reliably on the lab queue, so execution is supported for Mesabi only. Genomes up to 100 Mbp in size can be successfully run on Mesabi.

 
 

 

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