pasa
Software Description
PASA, acronym for Program to Assemble Spliced Alignments (and pronounced \'pass-uh\'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.
Info
Module Name
pasa
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
PASA, acronym for Program to Assemble Spliced Alignments (and pronounced \'pass-uh\'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load pasa
Depending on where you are working, there may be more than one version of pasa available. To see which modules are available for loading you can run:
module avail pasa
Agate Modules
Default
2.3.3
Other Modules
2.3.1, 2.3.3
Mangi Modules
Default
2.3.3
Other Modules
2.3.1, 2.3.3
Mesabi Modules
Default
2.3.3
Other Modules
2.3.1, 2.3.3