Paired-end synchronization check

The Paired-end synchronization check package includes two scripts for determining if the reads in paired-end fastq files are in the proper order (synchronized). 

To run this software interactively in a Linux environment run the commands:

module load pe-sync

The script checks a directory of paired-end fastq files: /path/to/fastq/directory

The script may not be able to correctly identify pairs of paired-end files if the file names have been modified, in which case you should use the script to check pairs of files. readfile1.fastq readfile2.fastq
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