pilon
Software Description
From the Pilon documentation: \"Pilon uses read alignment analysis to diagnose, report, and automatically improve de novo genome assemblies as well as call variants.\"
Info
Module Name
pilon
Last Updated On
02/09/2024
Support Level
Primary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
From the Pilon documentation: \"Pilon uses read alignment analysis to diagnose, report, and automatically improve de novo genome assemblies as well as call variants.\"
General Linux
To run this software interactively in a Linux environment use the commands:
module load pilon
pilon [options]
Because this software uses an alias for to create the pilon command, to use this software in a PBS script you will need to add the following line to your script before loading the pilon module:
shopt -s expand_aliases
Instructions for using Pilon can be found on the Pilon Wiki
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1.22
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