pymol

Molecular Modeling and Simulation
Data Visualization

Software Description

PyMOL is a Python-enhanced molecular graphics program. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. It also has a number of third party plugins available. Currently installed third party plugins at MSI are: Caver v2, Mole, and EMovie.


Info

Module Name

pymol

Last Updated On

08/29/2023

Support Level

Secondary Support

Software Access Level

Open Access

Home Page

http://pymolwiki.org/index.php/Main_Page

Documentation

Software Description

PyMOL is a Python-enhanced molecular graphics program. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. It also has a number of third party plugins available. Currently installed third party plugins at MSI are: Caver v2, Mole, and EMovie.

General Linux

To run this software interactively in a Linux environment use the commands:

module load pymol
pymol

To install PyMOL on your own system contact help@msi.umn.edu to receive the PyMOL credentials. Additional Information PyMOL Wiki

Agate Modules

Default

Other Modules

1.7.4.4, 2.0.1, 2.5.0

Mangi Modules

Default

Other Modules

1.7.4.4, 2.0.1, 2.5.0

Mesabi Modules

Default

Other Modules

1.7.4.4, 2.0.1, 2.5.0