pymol
Software Description
PyMOL is a Python-enhanced molecular graphics program. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. It also has a number of third party plugins available. Currently installed third party plugins at MSI are: Caver v2, Mole, and EMovie.
Info
Module Name
pymol
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
PyMOL is a Python-enhanced molecular graphics program. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. It also has a number of third party plugins available. Currently installed third party plugins at MSI are: Caver v2, Mole, and EMovie.
General Linux
To run this software interactively in a Linux environment use the commands:
module load pymol
pymol
To install PyMOL on your own system contact help@msi.umn.edu to receive the PyMOL credentials. Additional Information PyMOL Wiki
Agate Modules
Default
Other Modules
1.7.4.4, 2.0.1, 2.5.0
Mangi Modules
Default
Other Modules
1.7.4.4, 2.0.1, 2.5.0
Mesabi Modules
Default
Other Modules
1.7.4.4, 2.0.1, 2.5.0