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QIIME (canonically pronounced ‘Chime’) is a pipeline for performing microbial community analysis that integrates many third party tools which have become standard in the field.
To run qiime interatively on a Linux system, use the following command to load the module and then enter the name of the qiime program that you want to run
$ module load qiime/1.9.0
For more information on Qiime specific tutorials, please refer to: