qiime2
Software Description
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline.
Info
Module Name
qiime2
Last Updated On
10/16/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline.
Slurm Example
#!/bin/bash
#SBATCH --job-name="rfm_RunQIIME2Test_job"
#SBATCH --ntasks=1
#SBATCH --ntasks-per-node=1
#SBATCH --output=rfm_RunQIIME2Test_job.out
#SBATCH --error=rfm_RunQIIME2Test_job.err
#SBATCH --time=0:10:0
#SBATCH -p small,large,ram256g,ram1t
module load qiime2/2019.1
qiime info
General Linux
To load this module for use in a Linux environment, you can run the command:
module load qiime2
Depending on where you are working, there may be more than one version of qiime2 available. To see which modules are available for loading you can run:
module avail qiime2
Agate Modules
Default
Other Modules
2019.10, 2020.6, 2020.8, 2021.2, 2023.2, 2017.9, 2018.11, 2018.2, 2018.6, 2019.1
Mangi Modules
Default
2019.10
Other Modules
2019.10, 2020.6, 2020.8, 2021.2, 2023.2, 2017.9, 2018.11, 2018.2, 2018.6, 2019.1
Mesabi Modules
Default
Other Modules
2019.10, 2020.6, 2020.8, 2021.2, 2023.2, 2017.9, 2018.11, 2018.2, 2018.6, 2019.1