Minnesota Supercomputing Institute
4.3
4.3, 4.6.3, 5.0.0, 5.2.0
Thursday, June 1, 2023
QUAST stands for QUality ASsesment Tool. The tool evaluates genome assemblies by computing various metrics. You can find all project news at http://sourceforge.net/projects/quast.
#!/bin/bash #SBATCH --job-name="rfm_RunQUASTTest_job" #SBATCH --ntasks=1 #SBATCH --ntasks-per-node=1 #SBATCH --output=rfm_RunQUASTTest_job.out #SBATCH --error=rfm_RunQUASTTest_job.err #SBATCH --time=0:10:0 #SBATCH -p small,large,ram256g,ram1t module load quast/4.3 wget https://public.s3.msi.umn.edu/reframe/sw/quast/contigs_1.fasta wget https://public.s3.msi.umn.edu/reframe/sw/quast/contigs_2.fasta wget https://public.s3.msi.umn.edu/reframe/sw/quast/genes.gff wget https://public.s3.msi.umn.edu/reframe/sw/quast/reference.fasta.gz quast contigs_1.fasta contigs_2.fasta -R reference.fasta.gz -G genes.gff -o output