riboPicker

Software Summary

Mesabi

Default Module: 

0.4.3

Other Modules Available: 

0.4.3

Last Updated On: 

Wednesday, December 7, 2016

Itasca

Default Module: 

0.4.3

Other Modules Available: 

0.4.3

Last Updated On: 

Wednesday, December 7, 2016

Lab

Default Module: 

0.4.3

Other Versions Available: 

0.4.3

Last Updated On: 

Wednesday, December 7, 2016

Last Updated On: 

Wednesday, December 7, 2016

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

The riboPicker tool can be used to automatically identify and efficiently remove rRNA-like sequences from metatranscriptomic and metagenomic datasets.

At MSI, we provide a stand-alone version of the tool.  So the user must have some linux background to use this tool.

If you are not familiar with the command line, the developer also provides a web-version of the software at:

http://edwards.sdsu.edu/cgi-bin/ribopicker/ribopicker.cgi

Please note, for the web-version, your input file should be less than 2GB in size.

Software Documentation

Software Documentation Tabs