SOAP

Software Summary

Mesabi

Default Module: 

2

Other Modules Available: 

2

Last Updated On: 

Wednesday, December 7, 2016

Itasca

Default Module: 

2

Other Modules Available: 

2

Last Updated On: 

Wednesday, December 7, 2016

Lab

Default Module: 

2

Other Versions Available: 

2

Last Updated On: 

Wednesday, December 7, 2016

Last Updated On: 

Wednesday, December 7, 2016

Support Level: 
Minimal Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

SOAP has been in evolution from a single alignment tool to a tool package that provides full solution to next generation sequencing data analysis. Currently, it consists of a new alignment tool (SOAPaligner/soap2), a re-sequencing consensus sequence builder (SOAPsnp), an indel finder ( SOAPindel ), a structural variation scanner ( SOAPsv ) and a de novo short reads assembler ( SOAPdenovo ).

 

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.

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