SOAPdenovo

Search Software

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.

SW Documentation: 

To run this software interactively in a Linux environment run the commands:

module load soap
SOAPdenovo-127mer

For additional information, see: http://soap.genomics.org.cn/soapdenovo.html

Short Name: 
soapdenovo
SW Module: 
soapdenovo
Service Level: 
Minimal
SW Category