SPADE: Spanning Tree Progression of Density Normalized Events

SPADE is a visualization and analysis tool for high-dimensional flow cytometry data. SPADE is implemented as an R package.

SPADE is available on the labs cluster.

As an R package, SPADE is loaded into R with the following command:


You will see the following output:

Loading required package: igraph
Loading required package: Rclusterpp
Loading required package: Rcpp
Loading required package: RcppEigen

Example usage and a FAQ is available here.

SPADE is also available as a plug-in from the linux deploy of the Cytoscape application. 

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