SPADE

Search Software

SPADE: Spanning Tree Progression of Density Normalized Events

SPADE is a visualization and analysis tool for high-dimensional flow cytometry data. SPADE is implemented as an R package.

SW Documentation: 

SPADE is available on the labs cluster.

As an R package, SPADE is loaded into R with the following command:

>library(spade)

You will see the following output:

>library('spade')
Loading required package: igraph
Loading required package: Rclusterpp
Loading required package: Rcpp
Loading required package: RcppEigen

Example usage and a FAQ is available here.

SPADE is also available as a plug-in from the linux deploy of the Cytoscape application. 

Short Name: 
spade
SW Module: 
R library
Service Level: 
Ancillary
SW Category