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SPADE: Spanning Tree Progression of Density Normalized Events
SPADE is a visualization and analysis tool for high-dimensional flow cytometry data. SPADE is implemented as an R package.
SPADE is available on the labs cluster.
As an R package, SPADE is loaded into R with the following command:
You will see the following output:
>library('spade') Loading required package: igraph Loading required package: Rclusterpp Loading required package: Rcpp Loading required package: RcppEigen
Example usage and a FAQ is available here.
SPADE is also available as a plug-in from the linux deploy of the Cytoscape application.