sra-toolkit
Software Description
The SRA Toolkit will allow you to programmatically access data housed within NCBI\'s Sequence Read Archive. You can also use the toolkit to convert between many bioinformatics file formats and the SRA format.
Info
Module Name
sratoolkit
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
The SRA Toolkit will allow you to programmatically access data housed within NCBI\'s Sequence Read Archive. You can also use the toolkit to convert between many bioinformatics file formats and the SRA format.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load sratoolkit
Depending on where you are working, there may be more than one version of sratoolkit available. To see which modules are available for loading you can run:
module avail sratoolkit
Agate Modules
Default
3.0.0
Other Modules
2.1.6, 2.10.4, 2.5.4, 2.8.2, 3.0.0
Mangi Modules
Default
3.0.0
Other Modules
2.1.6, 2.10.4, 2.5.4, 2.8.2, 3.0.0
Mesabi Modules
Default
3.0.0
Other Modules
2.1.6, 2.10.4, 2.5.4, 2.8.2, 3.0.0