SSAHA2

Software Summary

Mesabi

Default Module: 

2.5.5

Other Modules Available: 

2.5.5

Last Updated On: 

Wednesday, December 7, 2016

Itasca

Default Module: 

2.5.5

Other Modules Available: 

2.5.5

Last Updated On: 

Wednesday, December 7, 2016

Lab

Default Module: 

2.5.5

Other Versions Available: 

2.5.5

Last Updated On: 

Wednesday, December 7, 2016

Last Updated On: 

Wednesday, December 7, 2016

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences.SSAHA2 reads of most sequencing platforms (ABI-Sanger, Roche 454, Illumina-Solexa) and a range of output formats (SAM, CIGAR, PSL etc.) are supported. A pile-up pipeline for analysis and genotype calling is available as a separate package.

Software Documentation

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