ssaha2
Software Description
SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences.SSAHA2 reads of most sequencing platforms (ABI-Sanger, Roche 454, Illumina-Solexa) and a range of output formats (SAM, CIGAR, PSL etc.) are supported. A pile-up pipeline for analysis and genotype calling is available as a separate package.
Info
Module Name
ssaha2
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a pairwise sequence alignment program designed for the efficient mapping of sequencing reads onto genomic reference sequences.SSAHA2 reads of most sequencing platforms (ABI-Sanger, Roche 454, Illumina-Solexa) and a range of output formats (SAM, CIGAR, PSL etc.) are supported. A pile-up pipeline for analysis and genotype calling is available as a separate package.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load ssaha2
Depending on where you are working, there may be more than one version of ssaha2 available. To see which modules are available for loading you can run:
module avail ssaha2
Agate Modules
Default
2.5.5
Other Modules
2.5.5
Mangi Modules
Default
2.5.5
Other Modules
2.5.5
Mesabi Modules
Default
2.5.5
Other Modules
2.5.5