star
Biostatistics
Genetics
Software Description
Spliced Transcripts Alignment to a Reference (STAR) is a software package developed for aligning large RNA-seq datasets.
Info
Module Name
star
Last Updated On
08/29/2023
Support Level
Primary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
Spliced Transcripts Alignment to a Reference (STAR) is a software package developed for aligning large RNA-seq datasets.
Slurm Example
#!/bin/bash
#SBATCH --job-name="rfm_RunSTARTest_job"
#SBATCH --ntasks=24
#SBATCH --ntasks-per-node=24
#SBATCH --output=rfm_RunSTARTest_job.out
#SBATCH --error=rfm_RunSTARTest_job.err
#SBATCH --time=0:10:0
#SBATCH -p small,large,ram256g,ram1t
module load star/2.5.3a
wget https://public.s3.msi.umn.edu/reframe/sw/star/Melampsora_laricipopulina....
wget https://public.s3.msi.umn.edu/reframe/sw/trimmomatic/seq.fq
STAR --runMode genomeGenerate --runThreadN 24 --genomeDir ./ --genomeFastaFiles Melampsora_laricipopulina.GCA_000204055.1.dna.toplevel.fa
STAR --genomeDir ./ --runThreadN 24 --readFilesIn seq.fq --outFileNamePrefix output
General Linux
To load this module for use in a Linux environment, you can run the command:
module load star
Depending on where you are working, there may be more than one version of star available. To see which modules are available for loading you can run:
module avail star
Agate Modules
Default
2.7.1a
Other Modules
2.7.1a, 2.5.3a
Mangi Modules
Default
2.7.1a
Other Modules
2.7.1a, 2.5.3a
Mesabi Modules
Default
2.7.1a
Other Modules
2.7.1a, 2.5.3a