transdecoder
Software Description
TransDecoder is software for identifying candidate coding regions within transcript sequences, including those from de novo RNA-Seq transcript assembly via Trinity, or from RNA-Seq alignments to the genome using Tophat and Cufflinks.
Info
Module Name
transdecoder
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
TransDecoder is software for identifying candidate coding regions within transcript sequences, including those from de novo RNA-Seq transcript assembly via Trinity, or from RNA-Seq alignments to the genome using Tophat and Cufflinks.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load transdecoder
Depending on where you are working, there may be more than one version of transdecoder available. To see which modules are available for loading you can run:
module avail transdecoder
Agate Modules
Default
3.0.1
Other Modules
3.0.1
Mangi Modules
Default
3.0.1
Other Modules
3.0.1
Mesabi Modules
Default
3.0.1
Other Modules
3.0.1