trinity

Software Summary

Mesabi

Default Module: 
Other Modules Available: 

2.0.2, 2.1.1, 2.4.0, 20130225, 20140717, 2.5.1

Last Updated On: 

Wednesday, January 17, 2018

Itasca

Default Module: 

20140717

Other Modules Available: 

2.0.2, 2.1.1, 2.4.0, 20130225, 20140717, 2.5.1

Last Updated On: 

Wednesday, January 17, 2018

Lab

Default Module: 

20140717

Other Versions Available: 

2.0.2, 2.1.1, 2.4.0, 20130225, 20140717, 2.5.1

Last Updated On: 

Wednesday, January 17, 2018

Last Updated On: 

Wednesday, January 17, 2018

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Software Categories: 
Genetics
Software Description
Software Description: 

Trinity is a program for the efficient and robust de novo (no reference genome required) reconstruction of transcriptomes from RNA-seq data. Trinity produces a large number of intermediate files (500,000 to 1,000,000). The MSI filesystem limits each group to a maximum of 1 million files. Therefore it is recommended that you configure Trinity to write output to /scratch (using the option "--output /scratch/trinity"), where there is no file number limit, and copy the fasta assembly file back to your group folder when Trinity has finished.

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