Minnesota Supercomputing Institute
With regards to the safety measures put in place by the university to mitigate the risks of the COVID-19 virus, at this time all MSI systems will remain operational and can be accessed remotely as usual. The only planned outages concern our in-person Helpdesk and tutorials. More information, as well as alternative remote support options, can be found at MSI COVID-19 Continuity Plan
Monday, June 25, 2018
Trinotate is a transcriptome annotation suite designed for use with de novo assembled transcriptomes from model or non model organisms.
In order to load Trinotate for interactive use on a Linux system, use the following command:
module load trinotate
Please note that several of the dependencies of Trinotate are restricted-access software, for use by academic researchers only. In order to use trinotate, contact firstname.lastname@example.org and request access to SignalP4, TMHMM, and RNAmmer. Documentation on the use of Trinotate can be found on the software's webpage.