Trinotate

Software Summary

Mesabi

Default Module:

4.0.0

Other Modules Available:

3.0.1, 3.1.1, 4.0.0

Last Updated On:

Friday, March 3, 2023

Mesabi K40

Default Module:

4.0.0

Other Modules Available:

3.0.1, 3.1.1, 4.0.0

Last Updated On:

Friday, March 3, 2023

Mangi

Default Module:

4.0.0

Other Modules Available:

3.0.1, 3.1.1, 4.0.0

Last Updated On:

Friday, March 3, 2023

Mangi v100

Default Module:

4.0.0

Other Modules Available:

3.0.1, 3.1.1, 4.0.0

Last Updated On:

Friday, March 3, 2023

NICE

Default Module:

4.0.0

Other Versions Available:

3.0.1, 3.1.1, 4.0.0

Last Updated On:

Friday, March 3, 2023

Last Updated On:

Friday, March 3, 2023

Support Level:

Primary Support

Software Access Level:

Open Access

Home Page:

Link

Software Categories:

Biostatistics

Proteomics

Software Description

Trinotate is a transcriptome annotation suite designed for use with de novo assembled transcriptomes from model or non model organisms.

Software Documentation

Software Documentation Tabs

General Linux

In order to load Trinotate for interactive use on a Linux system, use the following command:

module load trinotate

Please note that several of the dependencies of Trinotate are restricted-access software, for use by academic researchers only. In order to use trinotate, contact help@msi.umn.edu and request access to SignalP4, TMHMM, and RNAmmer. Documentation on the use of Trinotate can be found on the software's webpage.