velvet

Genetics

Software Description

Velvet is a software for De Novo Short Read Assembly Using De Bruijn Graphs.It can be used for Solexa and 454 sequencing data assembly.


Info

Module Name

velvet

Last Updated On

08/29/2023

Support Level

Secondary Support

Software Access Level

Open Access

Home Page

http://www.ebi.ac.uk/~zerbino/velvet/

Documentation

Software Description

Velvet is a software for De Novo Short Read Assembly Using De Bruijn Graphs.It can be used for Solexa and 454 sequencing data assembly.

General Linux

To load this software in a Linux environment run the command(s):

module load velvet

Package velvet contains two programs:

velveth

and

velvetg

Velveth is the program that creates hash tables that will be used by

velvetg

to assemble the sequences. To run this software run the command(s):

velveth

or

velvetg

Home Page: http://www.ebi.ac.uk/~zerbino/velvet/

Agate Modules

Default

Other Modules

1.2.03, 1.2.08, 1.2.10

Mangi Modules

Default

1.2.10

Other Modules

1.2.03, 1.2.08, 1.2.10

Mesabi Modules

Default

Other Modules

1.2.03, 1.2.08, 1.2.10