ViennaRNA

Search Software

The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.

SW Documentation: 
To load this software in a Linux environment run the commands:
module load viennarna
Now, type the name of the desired stand-alone program from the list below

Additional Information

For a detailed information, take a look at the HTML versions of the man pages for the programs at http://www.tbi.univie.ac.at/RNA/.

  • RNAfold -- predict minimum energy secondary structures and pair probabilities
  • RNAeval -- evaluate energy of RNA secondary structures
  • RNAheat -- calculate the specific heat (melting curve) of an RNA sequence
  • RNAinverse -- inverse fold (design) sequences with predefined structure
  • RNAdistance -- compare secondary structures
  • RNApdist -- compare base pair probabilities
  • RNAsubopt -- complete suboptimal folding
  • RNAplot -- RNA structure drawings in PostScript, SVG, or GML
  • RNAcofold -- predict hybrid structure of two sequences
  • RNAduplex -- predict possible hybridization sites between two sequences
  • RNAup -- predict RNA-RNA interaction sites using accessibilities
  • RNAalifold -- predict the consensus structure of several aligned sequences
  • RNAaliduplex -- comparative (multiple alignment) version of RNAduplex
  • RNALfold -- predict locally stable structure of long sequences
  • RNAplfold -- compute average pair probabilities for local base pairs in long sequences
  • RNApaln -- fast structural alignment of RNA sequences using string alignments
  • Several small but helpful Perl Utilities

 

Short Name: 
viennarna
SW Module: 
viennarna
Service Level: 
Minimal
SW Category: