Lecture Slides

Introduction to Linux

This tutorial will provide an introduction to the Linux operating system, with particular attention paid to working from the command line. The tutorial will cover basics such as fundamental commands, editing files, understanding directories and permissions, and remote access. No previous Linux experience is required.

Job Submission and Scheduling

This tutorial will introduce users to MSI supercomputers, and provide an overview of how to submit calculations to the job schedulers. Topics covered include creating job scripts, types of jobs, job queues, differences in available hardware, checking job status, and choosing an appropriate place to submit a calculation.

Rna-Seq Analysis

The RNA-Seq analysis tutorials includes two lectures and two hands-on guided tutorials. The lecture materials cover the basics of differential expression analysis and touches on other RNA-seq topics such as transcriptome assembly. 

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