This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution. A brief description of parallel programming using MPI message passing will be given. A brief description of parallel programming using OpenMP will also be given. The hybrid MPI/OpenMP model will be briefly described. This will be a fast crash course on the most basic parallel computation and programming methods. Examples of how to compile and execute simple parallel programs will be given.
Undergraduate and graduate students with some familiarity with finite element method, plus faculty interested in finite element analysis, optimization, or fatigue.
The SIMULIA Central’s Minneapolis office invites you to two-part seminar held on campus to provide an introductory, hands-on workshop with Abaqus and to introduce you to additional simulation technology recently made available to the University of Minnesota.
This tutorial will help users learn the basics of compiling and debugging their code on MSI systems. Particular attention will be paid to code written in Fortran, C, and C++. Basic methods for debugging will be outlined, with users being able to explore different debugging tools. This tutorial will focus primarily on compiling serial programs,but brief information on compiling and debugging parallel programs will also be given. Attendees should have a basic knowledge of Linux and rudimentary knowledge of a programming language.
This two part tutorial will first introduce you to the concept of interactive high performance computing, as distinct from batch computing. We will cover the Citrix (Windows) and NICE EnginFrame (Linux) interactive computing environments hosted by MSI. Attendees will learn how to launch virtual desktops at MSI, connect to a variety of resources, load software modules, and build complex research workflows.
Intel will be providing training, to help software developers optimize their codes for the Xeon Phi coprocessor. This training is being held at the Minnesota Supercomputing Institute at the University of Minnesota. Current University students, staff, and faculty are invited.
See the program description. While the training is free, you must pre-register.
The training will cover:
This tutorial will provide an introduction to the Linux operating system, with particular attention paid to working from the command line. The tutorial will cover basics such as fundamental commands, editing files, understanding directories and permissions, and remote access. No previous Linux experience is required.
This tutorial will introduce users to MSI supercomputers, and provide an overview of how to submit calculations to the job schedulers. Topics covered include creating job scripts, types of jobs, job queues, differences in available hardware, checking job status, and choosing an appropriate place to submit a calculation.
This tutorial is geared to new MSI users and will provide a high-level introduction to the facilities and computational resources at MSI.
The RNA-Seq analysis tutorials includes a lecture and a hands-on guided tutorial. The lecture materials cover the basics of differential expression analysis and touches on other RNA-seq topics such as transcriptome assembly.