This hands-on tutorial will introduce new bioinformaticitions to the skills needed to start to build more complex analysis pipelines. This tutorial will take you though the steps needed to run standard quality control analysis on Illumina data using scripting to automate the analysis.
In this tutorial you will be introduced to:
Command Line Enviroment
MSI Computational Resources
Moving Data Between Your Computer and MSI
Scripting to automate your analysis
Software needed to understand quality of FASTQ files