| Tutorial Name | Summary |
Next Date Offered |
|---|---|---|
| Software Installation and Management at MSI (On Site) |
This workshop covers the basics of how to create and maintain your own software environments at MSI. |
11/01/2022 |
| RNA-Seq Analysis (On Site) |
This tutorial covers the basics of differential expression analysis and touches on other RNA-seq topics such as transcriptome assembly. |
11/08/2022 |
| Single Cell Genomics and its application in Neuroscience research |
This tutorial is a lecture that covers basic principles as they pertain to single cell genomics. We will cover basic experimental design and data quality control for analyzing single cell data, followed by new developments in sequencing technologies, such as single nucleus sequencing, Patch sequencing, spatial genomics and so on. The material will also cover how these new technologies could contribute to new discoveries in Neuroscience researches. |
12/06/2022 |
| Data Storage Systems and Data Analysis Workflows for Research (Remote) | 03/02/2023 | |
| Data Storage Systems and Data Analysis Workflows for Research (On Site) |
In this tutorial you will learn about the data storage systems available for academic research at the University of Minnesota |
03/02/2023 |
| Parallel Computing On Agate (Remote) | 03/16/2023 | |
| Parallel Computing On Agate (On Site) |
This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution. |
03/16/2023 |
| Intro to Single-cell Genomics (Remote) | 03/30/2023 | |
| Intro to Single-cell Genomics (On Site) |
This tutorial is a lecture that covers basic experimental design principles as they pertain to single cell genomics. |
03/30/2023 |
| RNA-Seq Analysis (Remote and On-Site) | 04/11/2023 | |
| Software Installation and Management at MSI (Remote) | 04/13/2023 | |
| Intro to Single-cell Genomics (Duluth - SMed 142) |
This tutorial is a lecture that covers basic experimental design principles as they pertain to single cell genomics. We will cover common technological platforms for collecting single cell data, basic experimental design, data quality control, and overviews of common software tools used for analyzing single cell data. The material will cover some of the common applications of single cell data and compare them to bulk data. The main applications will be for single cell RNAseq, but the principles would be appropriate to other types single cell genomics data, as well. |
04/14/2023 |
| Intro to Pathway Analysis (remote) |
Agenda: 11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview 12:00 - 1:00 p.m.: Break 1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro 2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses |
04/18/2023 |
| Intro to Pathway Analysis (in person) |
Agenda: 11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview 12:00 - 1:00 p.m.: Break 1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro 2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses
|
04/18/2023 |
| Introduction to Minnesota Supercomputing Institute (MSI) (Remote) | 07/11/2023 | |
| Introduction to Minnesota Supercomputing Institute (MSI) |
This tutorial is geared to new MSI users and will provide a highlevel introduction to the facilities and computational resources at MSI. |
07/11/2023 |
| Introduction to Linux (In Person) |
This tutorial will provide an introduction to the Linux operating system, with particular attention paid to working from the command line |
07/12/2023 |
| Introduction to Linux (Remote) | 07/12/2023 | |
| Job Submission and Scheduling at MSI (In Person) |
This tutorial will introduce users to MSI supercomputers, and provide an overview of how to submit calculations to the job schedulers |
07/18/2023 |
| Job Submission and Scheduling at MSI (Remote) | 07/18/2023 | |
| Interactive Computing at MSI (Remote) | 07/20/2023 | |
| Interactive Computing at MSI (On Site) |
This two part tutorial will introduce you to the concept of interactive high performance computing, and provide attendees hands-on experience running interactive parallel jobs on the Mesabi HPC |
07/20/2023 |
| Introduction to Compiling and Profiling at MSI (Remote) | 07/25/2023 | |
| Introduction to Compiling and Profiling at MSI (On Site) |
This tutorial will help users learn the basics of compiling and debugging their code on MSI systems |
07/25/2023 |
| Programming with Python (On Site) |
Introduction to fundamentals of programming using the python language. |
08/01/2023 |
| Programming with Python (Remote) | 08/01/2023 | |
| Advanced Python (Remote) | 08/03/2023 | |
| Advanced Python (On Site) |
This session includes efficient data processing with NumPy and Scipy, data visualization, and techniques for using Python to drive parallel supercomputing tasks. |
08/03/2023 |
| RNA Seq Analysis @ UMN Duluth |
(UMN Duluth on site session), The RNA-Seq analysis tutorials includes a lecture and a hands-on guided tutorial |
N/A |
| Parallel Computing Overview |
This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution |
N/A |
Tutorials List
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