Tutorials List

Displaying 1 - 30 of 34
Tutorial Name Summary Next Date Offeredsort descending
Introduction to COMSOL Multiphysics

An interactive web workshop on the use of the COMSOL Multiphysics® software.

05/15/2019
Quality Control of Illumina Data with Galaxy

This hands-on tutorial will help a new user understand how to use the the Galaxy platform to analyze NGS data

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Rna-Seq Analysis

This tutorial covers the basics of differential expression analysis and touches on other RNA-seq topics such as transcriptome assembly.

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Introduction to Minnesota Supercomputing Institute (MSI)

This tutorial is geared to new MSI users and will provide a highlevel introduction to the facilities and computational resources at MSI.

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Job Submission and Scheduling

This tutorial will introduce users to MSI supercomputers, and provide an overview of how to submit calculations to the job schedulers

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Introduction to Linux

This tutorial will provide an introduction to the Linux operating system, with particular attention paid to working from the command line

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Intel Xeon Phi Coprocessor Developer Training

This tutorial covers Intel Xeon Phi architecture, programming models, parallel frameworks, and optimization methods

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Interactive Computing

This two part tutorial will introduce you to the concept of interactive high performance computing, and provide attendees hands-on experience running interactive parallel jobs on the Mesabi HPC 

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Compiling and Debugging

This tutorial will help users learn the basics of compiling and debugging their code on MSI systems

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Abaqus

This tutorial covers an overview of the new enhancements to Abacus as well as a brief introduction to Isight, Tosca, and fe-safe.

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Parallel Computing Overview

This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution

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MPI

This tutorial provides an introduction on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters

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Data Storage Systems and Data Analysis Workflows for Research

In this tutorial you will learn about the data storage systems available for academic research at the University of Minnesota

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Analyze ChIP-Seq Data at the Command Line

This tutorial focuses on command line tools in the Galaxy enviornment to analyze ChiP-Seq data, automate mapping and peak calling, and edit and run scripts.  

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Python for Scientific Computing

This session includes efficient data processing with NumPy and Scipy, data visualization, and techniques for using python to drive parallel supercomputing tasks.

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PacBio Sequencing - Lecture

This lecture will cover the special capabilities and use cases of PacBio sequencing as well as the basics of data analysis.

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Analysis of PacBio Sequencing Data Using SMRT Portal

This hands-on tutorial will cover installation and use of the SMRT portal at MSI to analyze PacBio sequencing data.

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Basics of RNA-Seq Data Analysis - Lecture

This lecture will cover the basics of RNA-Seq experimental design and data quality assessment, followed by an overview of data analysis for the detection of differentally expressed genes.

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Quality Control of Illumina Data at the Command Line

This hands-on tutorial will introduce new bioinformaticitions to the skills needed to start to build more complex analysis pipelines. 

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Digital Gene Expression (DGE) Analysis Using Galaxy, Human Data

This is a practical, hands-on tutorial designed to give participants experience with RNA-Seq data analysis using Tophat, Cufflinks, and CummRbund in Galaxy.

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Analyzing ChIP-Seq Data using Galaxy

This practical, hands-on tutorial is designed to give participants experience with ChIP-Seq data analysis using the Galaxy platform. 

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Interacting with dbGaP data on Stratus

This tutorial introduces Stratus to users who wish to process dbGaP data at MSI

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Proteomics Mass Spectrometry Data Analysis (Lecture)

(Lecture only) This tutorial is an introduction to common techniques for the analysis and quantitation of proteomics mass spectrometry ("mass spec") data.

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Getting started with XSEDE resources

This hands-on tutorial will introduce MSI researchers to multiple XSEDE resources.

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Introduction to Deep Learning with Caffe and Tensorflow

In this tutorial, MSI and Nvidia instructors will walk through an interactive exercise running programs such as Caffe and Tensorflow.

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Ingenuity Pathway Analysis (IPA) New User Training

This tutorial is an introductory lecture for new IPA users

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Proteomics Mass Spectrometry Data Analysis (Workshop)

(Hands on workshop) This tutorial is an introduction to common techniques for the analysis and quantitation of proteomics mass spectrometry ("mass spec") data.

 

 

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MPGI Workshop: Intro to MSI (Module 1)

MPGI and MSI led tutorial on MSI HPC systems and labs, as well as MSI storage options and policies.

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MPGI Workshop: Intro to Genomics Terminology and Analysis (Module 2)

MPGI and MSI led lecutre on descriptions of Illumina, Nanopore, and Pacific Biosciences technologies

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MPGI Workshop: Intro to PBS Scripts and Job Queues (Module 3)

MPGI and MSI led tutorial on how to write a PBS script and how to submit it to a queue

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