Tutorials List

Displaying 1 - 20 of 20
Tutorial Namesort descending Summary Next Date Offered
Basics of RNA-Seq Data Analysis - Lecture

This lecture will cover the basics of RNA-Seq experimental design and data quality assessment, followed by an overview of data analysis for the detection of differentally expressed genes.

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Compiling and Debugging

This tutorial will help users learn the basics of compiling and debugging their code on MSI systems

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Data Storage Systems and Data Analysis Workflows for Research

In this tutorial you will learn about the data storage systems available for academic research at the University of Minnesota

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Getting started with XSEDE resources

This hands-on tutorial will introduce MSI researchers to multiple XSEDE resources.

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Hands-on tutorial on RNA-Seq analysis using CHURP

This Hands-on tutorial will cover a standard RNA-Seq analysis using RIS pipeline CHURP 

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Interacting with dbGaP data on Stratus

This tutorial introduces Stratus to users who wish to process dbGaP data at MSI

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Interactive Computing

This two part tutorial will introduce you to the concept of interactive high performance computing, and provide attendees hands-on experience running interactive parallel jobs on the Mesabi HPC 

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Introduction to Deep Learning with Caffe and Tensorflow

In this tutorial, MSI and Nvidia instructors will walk through an interactive exercise running programs such as Caffe and Tensorflow.

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Introduction to Linux

This tutorial will provide an introduction to the Linux operating system, with particular attention paid to working from the command line

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Introduction to Minnesota Supercomputing Institute (MSI)

This tutorial is geared to new MSI users and will provide a highlevel introduction to the facilities and computational resources at MSI.

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Job Submission and Scheduling

This tutorial will introduce users to MSI supercomputers, and provide an overview of how to submit calculations to the job schedulers

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July 2020: Programming with Python

Introduction to fundamentals of programming using the python language
July 2020: Version Control with Git

This tutorial will cover the basics of version control using git and github

 07/21/2020
MPI

This tutorial provides an introduction on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters

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Parallel Computing Overview

This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution

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Programming with Python

Introduction to fundamentals of programming using the python language.

 06/05/2020
Python for Scientific Computing

This session includes efficient data processing with NumPy and Scipy, data visualization, and techniques for using python to drive parallel supercomputing tasks.

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Rna-Seq Analysis

This tutorial covers the basics of differential expression analysis and touches on other RNA-seq topics such as transcriptome assembly.

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Singularity & Containers

This course will introduce users to containers and provide hands-on experience running both interactively and within batch scheduled jobs.

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Version Control with Git

This tutorial will cover the basics of version control using git and github

 07/09/2020