Tutorials List

This lecture will cover the basics of RNA-Seq experimental design and data quality assessment, followed by an overview of data analysis for the detection of differentally expressed genes.

This Hands-on tutorial will cover a standard RNA-Seq analysis using RIS pipeline CHURP 

This two part tutorial will introduce you to the concept of interactive high performance computing, and provide attendees hands-on experience running interactive parallel jobs on the Mesabi HPC 

This tutorial is a lecture that covers basic experimental design principles as they pertain to single cell genomics. We will cover common technological platforms for collecting single cell data, basic experimental design, data quality control, and overviews of common software tools used for analyzing single cell data. The material will cover some of the common applications of single cell data and compare them to bulk data. The main applications will be for single cell RNAseq, but the principles would be appropriate to other types single cell genomics data, as well.

This tutorial will provide an introduction to the Linux operating system, with particular attention paid to working from the command line

This tutorial is geared to new MSI users and will provide a highlevel introduction to the facilities and computational resources at MSI.

Agenda:

   11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview

   12:00 - 1:00 p.m.: Break

   1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro

   2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses

An overview to using the Slurm Workload Manager at MSI

This tutorial will cover the basics of version control using git and github

This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution.