Pratik Jagtap

pratik's picture
Title: 
Computational Proteomics Consultant
Office: 
523 Walter
MSI Email: 
pratik@msi.umn.edu
UMN Email: 
pjagtap@umn.edu
Phone: 
(612) 625-6573
Education: 

Ph.D. (1994-2000) in Life Sciences from CCMB, Hyderabad. (India)

M.Sc (1994) in Microbiology with First Class from University of Pune.

Expertise: 

CORE SKILL SETS AND INTERESTS:  Quantitative proteomics; Mass spectral data analysis; Membrane proteomics; Metaproteomics, Microbial proteomics and Bdellovibrio Biology.

WORK EXPERIENCE•    Post Doctoral Researcher at University of Michigan, Ann Arbor (USA) and at Max Planck Institute for Developmental Biology, Tuebingen (Germany).•    Proteomics specialist (Product Manager) for Proteomics at Bio-Rad Laboratories (India) Pvt. Ltd.REPRESENTATIVE PUBLICATIONSPratik Jagtap,  Thomas McGowan,  Sricharan Bandhakavi,  Zheng Jin Tu,  Sean Seymour, Tim Griffin, Joel Rudney.(2012) Deep metaproteomic analysis of human salivary supernatant. Proteomics (Accepted for publication in Proteomics).Pratik Jagtap,  Sricharan Bandhakavi,  LeeAnn Higgins, Thomas McGowan,  Rongxiao Sa,  Matthew Stone, John Chilton, Edgar Arriaga, Sean Seymour and Tim Griffin. .(2012) Workflow for analysis of high mass accuracy salivary dataset using MaxQuant and ProteinPilot search algorithm. Proteomics (Accepted for publication in Proteomics).Kooren JA, Rhodus NL, Tang C, Jagtap P, Horrigan BJ, Griffin TJ. (2011) Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery. Clinical Proteomics. 13 (8):13.Mahoney DW, Therneau TM, Heppelmann CJ, Higgins L, Benson LM, Zenka RM, Jagtap P,  Nelsestuen GL, Bergen HR, Oberg AL. (2011) Relative Quantification: Characterization of Bias, Variability and Fold Changes in Mass Spectrometry Data from iTRAQ-Labeled Peptides. J Proteome Res. (PMID: 21755926)Pratik Jagtap, George Michailidis, Ryzsard Zielke, Nishi Patel, John Strahler, Adam Driks, Phil Andrews and Janine Maddock. (2006) Early events of Bacillus anthracis germination identified by time-course quantitative proteomics. Proteomics, (19): 5199-5211.Snjezana Rendulic, Pratik Jagtap, Andrea Rosinus, Mark Eppinger, Claudia Baar, Christa Lanz, Heike Keller, Carey Lambert, Katy J. Evans, Alexander Goesmann, Folker Meyer, R. Elizabeth Sockett and Stephan C. Schuster (2004) A Predator unmasked: The life cycle of Bdellovibrio bacteriovorus from a genomic perspective. Science. (303): 689-692.