Tutorials List

Displaying 1 - 25 of 25
Tutorial Name Summary Next Date Offeredsort descending
Introduction to Minnesota Supercomputing Institute (MSI)

This tutorial is geared to new MSI users and will provide a highlevel introduction to the facilities and computational resources at MSI.

06/25/2019
Introduction to Linux

This tutorial will provide an introduction to the Linux operating system, with particular attention paid to working from the command line

07/02/2019
Data Storage Systems and Data Analysis Workflows for Research

In this tutorial you will learn about the data storage systems available for academic research at the University of Minnesota

07/09/2019
Interactive Computing

This two part tutorial will introduce you to the concept of interactive high performance computing, and provide attendees hands-on experience running interactive parallel jobs on the Mesabi HPC 

07/23/2019
Singularity & Containers

This course will introduce users to containers and provide hands-on experience running both interactively and within batch scheduled jobs.

07/30/2019
Quality Control of Illumina Data with Galaxy

This hands-on tutorial will help a new user understand how to use the the Galaxy platform to analyze NGS data

N/A
Rna-Seq Analysis

This tutorial covers the basics of differential expression analysis and touches on other RNA-seq topics such as transcriptome assembly.

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Compiling and Debugging

This tutorial will help users learn the basics of compiling and debugging their code on MSI systems

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Abaqus

This tutorial covers an overview of the new enhancements to Abacus as well as a brief introduction to Isight, Tosca, and fe-safe.

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MPI

This tutorial provides an introduction on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters

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PacBio Sequencing - Lecture

This lecture will cover the special capabilities and use cases of PacBio sequencing as well as the basics of data analysis.

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Analysis of PacBio Sequencing Data Using SMRT Portal

This hands-on tutorial will cover installation and use of the SMRT portal at MSI to analyze PacBio sequencing data.

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Basics of RNA-Seq Data Analysis - Lecture

This lecture will cover the basics of RNA-Seq experimental design and data quality assessment, followed by an overview of data analysis for the detection of differentally expressed genes.

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Quality Control of Illumina Data at the Command Line

This hands-on tutorial will introduce new bioinformaticitions to the skills needed to start to build more complex analysis pipelines. 

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Interacting with dbGaP data on Stratus

This tutorial introduces Stratus to users who wish to process dbGaP data at MSI

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Proteomics Mass Spectrometry Data Analysis (Lecture)

(Lecture only) This tutorial is an introduction to common techniques for the analysis and quantitation of proteomics mass spectrometry ("mass spec") data.

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Getting started with XSEDE resources

This hands-on tutorial will introduce MSI researchers to multiple XSEDE resources.

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Introduction to Deep Learning with Caffe and Tensorflow

In this tutorial, MSI and Nvidia instructors will walk through an interactive exercise running programs such as Caffe and Tensorflow.

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Proteomics Mass Spectrometry Data Analysis (Workshop)

(Hands on workshop) This tutorial is an introduction to common techniques for the analysis and quantitation of proteomics mass spectrometry ("mass spec") data.

 

 

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MPGI Workshop: Intro to MSI (Module 1)

MPGI and MSI led tutorial on MSI HPC systems and labs, as well as MSI storage options and policies.

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MPGI Workshop: Intro to Genomics Terminology and Analysis (Module 2)

MPGI and MSI led lecutre on descriptions of Illumina, Nanopore, and Pacific Biosciences technologies

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MPGI Workshop: Intro to PBS Scripts and Job Queues (Module 3)

MPGI and MSI led tutorial on how to write a PBS script and how to submit it to a queue

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MPGI Workshop: Job Parallelization with Task Arrays and GNU Parallel (Module 4)

MPGI and MSI led tutorial on how to use task arrays or GNU parallel to make use of the parallel computing environment at MSI.

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Introduction to Performance Tools

This tutorial provides an introduction on how to use performance tools to optimize the performance of a program.

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Introduction to COMSOL Multiphysics

An interactive web workshop on the use of the COMSOL Multiphysics® software.

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