| Tutorial Name | Summary |
Next Date Offered |
|---|---|---|
| RNA Seq Analysis @ UMN Duluth |
(UMN Duluth on site session), The RNA-Seq analysis tutorials includes a lecture and a hands-on guided tutorial |
N/A |
| July 2020: Programming with Python |
Introduction to fundamentals of programming using the python language |
N/A |
| July 2020: Version Control with Git |
This tutorial will cover the basics of version control using git and github |
N/A |
| Introduction to Slurm Workload Manager |
An overview to using the Slurm Workload Manager at MSI |
N/A |
| Q&A: Introduction to MSI |
Q&A session geared to new MSI users |
N/A |
| Q&A: Introduction to Linux |
Q&A session covering an introduction to the Linux operating system |
N/A |
| Q&A: Programming with Python |
Q&A session going over the fundamentals of programming using the python language |
N/A |
| Q&A: Interactive Computing at MSI |
Q&A session introducing you to the concept of interactive high performance computing, as distinct from batch computing |
N/A |
| Q&A: Data Storage Systems and Data Analysis Workflows for Research |
Q&A session about the data storage systems available for academic research at the University of Minnesota. |
N/A |
| Q&A: Parallel Computing Overview |
Q&A session about the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution. |
N/A |
| Q&A: MPI |
Q&A session on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters. |
N/A |
| Q&A: Compiling and Debugging at MSI |
Q&A session to learn the basics of compiling and debugging their code on MSI systems |
N/A |
| Q&A: Singularity and Containers |
Q&A session introducing users to containers and provide hands-on experience running both interactively and within batch scheduled jobs. |
N/A |
| Q&A: Job Submission and Scheduling at MSI |
Q&A session about using Slurm Workload Manager at MSI |
N/A |
| Version Control with Git |
This tutorial will cover the basics of version control using git and github |
N/A |
| Hands-on tutorial on RNA-Seq analysis using CHURP |
This Hands-on tutorial will cover a standard RNA-Seq analysis using RIS pipeline CHURP |
N/A |
| Singularity & Containers |
This course will introduce users to containers and provide hands-on experience running both interactively and within batch scheduled jobs. |
N/A |
| Introduction to Deep Learning with Caffe and Tensorflow |
In this tutorial, MSI and Nvidia instructors will walk through an interactive exercise running programs such as Caffe and Tensorflow. |
N/A |
| Getting started with XSEDE resources |
This hands-on tutorial will introduce MSI researchers to multiple XSEDE resources. |
N/A |
| Interacting with dbGaP data on Stratus |
This tutorial introduces Stratus to users who wish to process dbGaP data at MSI |
N/A |
| Basics of RNA-Seq Data Analysis - Lecture |
This lecture will cover the basics of RNA-Seq experimental design and data quality assessment, followed by an overview of data analysis for the detection of differentally expressed genes. |
N/A |
| Parallel Computing Overview |
This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution |
N/A |
| MPI |
This tutorial provides an introduction on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters |
N/A |
| Advanced Python (On Site) |
This session includes efficient data processing with NumPy and Scipy, data visualization, and techniques for using Python to drive parallel supercomputing tasks. |
04/20/2023 |
| Advanced Python (Remote) | 04/20/2023 | |
| Intro to Pathway Analysis (remote) |
Agenda: 11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview 12:00 - 1:00 p.m.: Break 1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro 2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses |
04/18/2023 |
| Intro to Pathway Analysis (in person) |
Agenda: 11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview 12:00 - 1:00 p.m.: Break 1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro 2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses
|
04/18/2023 |
| Introduction to Minnesota Supercomputing Institute (MSI) |
This tutorial is geared to new MSI users and will provide a highlevel introduction to the facilities and computational resources at MSI. |
04/14/2023 |
| Intro to Single-cell Genomics (Duluth - SMed 142) |
This tutorial is a lecture that covers basic experimental design principles as they pertain to single cell genomics. We will cover common technological platforms for collecting single cell data, basic experimental design, data quality control, and overviews of common software tools used for analyzing single cell data. The material will cover some of the common applications of single cell data and compare them to bulk data. The main applications will be for single cell RNAseq, but the principles would be appropriate to other types single cell genomics data, as well. |
04/14/2023 |
| Software Installation and Management at MSI (Remote) | 04/13/2023 |
Tutorials List
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