| Tutorial Name | Summary |
Next Date Offered |
|---|---|---|
| RNA Seq Analysis @ UMN Duluth |
(UMN Duluth on site session), The RNA-Seq analysis tutorials includes a lecture and a hands-on guided tutorial |
N/A |
| July 2020: Programming with Python |
Introduction to fundamentals of programming using the python language |
N/A |
| July 2020: Version Control with Git |
This tutorial will cover the basics of version control using git and github |
N/A |
| Introduction to Slurm Workload Manager |
An overview to using the Slurm Workload Manager at MSI |
N/A |
| Q&A: Introduction to MSI |
Q&A session geared to new MSI users |
N/A |
| Q&A: Introduction to Linux |
Q&A session covering an introduction to the Linux operating system |
N/A |
| Q&A: Programming with Python |
Q&A session going over the fundamentals of programming using the python language |
N/A |
| Q&A: Interactive Computing at MSI |
Q&A session introducing you to the concept of interactive high performance computing, as distinct from batch computing |
N/A |
| Q&A: Data Storage Systems and Data Analysis Workflows for Research |
Q&A session about the data storage systems available for academic research at the University of Minnesota. |
N/A |
| Q&A: Parallel Computing Overview |
Q&A session about the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution. |
N/A |
| Q&A: MPI |
Q&A session on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters. |
N/A |
| Q&A: Compiling and Debugging at MSI |
Q&A session to learn the basics of compiling and debugging their code on MSI systems |
N/A |
| Q&A: Singularity and Containers |
Q&A session introducing users to containers and provide hands-on experience running both interactively and within batch scheduled jobs. |
N/A |
| Q&A: Job Submission and Scheduling at MSI |
Q&A session about using Slurm Workload Manager at MSI |
N/A |
| Version Control with Git |
This tutorial will cover the basics of version control using git and github |
N/A |
| Hands-on tutorial on RNA-Seq analysis using CHURP |
This Hands-on tutorial will cover a standard RNA-Seq analysis using RIS pipeline CHURP |
N/A |
| Getting started with XSEDE resources |
This hands-on tutorial will introduce MSI researchers to multiple XSEDE resources. |
N/A |
| Singularity & Containers |
This course will introduce users to containers and provide hands-on experience running both interactively and within batch scheduled jobs. |
N/A |
| Introduction to Deep Learning with Caffe and Tensorflow |
In this tutorial, MSI and Nvidia instructors will walk through an interactive exercise running programs such as Caffe and Tensorflow. |
N/A |
| Parallel Computing Overview |
This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution |
N/A |
| Interacting with dbGaP data on Stratus |
This tutorial introduces Stratus to users who wish to process dbGaP data at MSI |
N/A |
| Basics of RNA-Seq Data Analysis - Lecture |
This lecture will cover the basics of RNA-Seq experimental design and data quality assessment, followed by an overview of data analysis for the detection of differentally expressed genes. |
N/A |
| MPI |
This tutorial provides an introduction on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters |
N/A |
| Intro to Pathway Analysis (in person) |
Agenda: 11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview 12:00 - 1:00 p.m.: Break 1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro 2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses
|
04/18/2023 |
| Intro to Pathway Analysis (remote) |
Agenda: 11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview 12:00 - 1:00 p.m.: Break 1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro 2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses |
04/18/2023 |
| RNA-Seq Analysis (Remote and On-Site) | 04/11/2023 | |
| Intro to Single-cell Genomics (On Site) |
This tutorial is a lecture that covers basic experimental design principles as they pertain to single cell genomics. |
03/30/2023 |
| Intro to Single-cell Genomics (Remote) | 03/30/2023 | |
| Advanced Python (On Site) |
This session includes efficient data processing with NumPy and Scipy, data visualization, and techniques for using Python to drive parallel supercomputing tasks. |
03/28/2023 |
| Advanced Python (Remote) | 03/28/2023 |
Tutorials List
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