Tutorials List

Displaying 1 - 30 of 50
Tutorial Name Summary Next Date Offeredsort ascending
RNA Seq Analysis @ UMN Duluth

(UMN Duluth on site session), The RNA-Seq analysis tutorials includes a lecture and a hands-on guided tutorial

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July 2020: Programming with Python

Introduction to fundamentals of programming using the python language

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July 2020: Version Control with Git

This tutorial will cover the basics of version control using git and github

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Introduction to Slurm Workload Manager

An overview to using the Slurm Workload Manager at MSI

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Q&A: Introduction to MSI

Q&A session geared to new MSI users

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Q&A: Introduction to Linux

Q&A session covering an introduction to the Linux operating system

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Q&A: Programming with Python

Q&A session going over the fundamentals of programming using the python language

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Q&A: Interactive Computing at MSI

Q&A session introducing you to the concept of interactive high performance computing, as distinct from batch computing

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Q&A: Data Storage Systems and Data Analysis Workflows for Research

Q&A session about the data storage systems available for academic research at the University of Minnesota.

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Q&A: Parallel Computing Overview

Q&A session about the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution.

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Q&A: MPI

Q&A session on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters.

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Q&A: Compiling and Debugging at MSI

Q&A session to learn the basics of compiling and debugging their code on MSI systems

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Q&A: Singularity and Containers

Q&A session introducing users to containers and provide hands-on experience running both interactively and within batch scheduled jobs.

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Q&A: Job Submission and Scheduling at MSI

Q&A session about using Slurm Workload Manager at MSI

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Version Control with Git

This tutorial will cover the basics of version control using git and github

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Hands-on tutorial on RNA-Seq analysis using CHURP

This Hands-on tutorial will cover a standard RNA-Seq analysis using RIS pipeline CHURP 

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Getting started with XSEDE resources

This hands-on tutorial will introduce MSI researchers to multiple XSEDE resources.

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Singularity & Containers

This course will introduce users to containers and provide hands-on experience running both interactively and within batch scheduled jobs.

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Introduction to Deep Learning with Caffe and Tensorflow

In this tutorial, MSI and Nvidia instructors will walk through an interactive exercise running programs such as Caffe and Tensorflow.

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Parallel Computing Overview

This tutorial will help users learn the basics of parallel computation methods, including strategies for collecting calculations together for parallel execution

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Interacting with dbGaP data on Stratus

This tutorial introduces Stratus to users who wish to process dbGaP data at MSI

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Basics of RNA-Seq Data Analysis - Lecture

This lecture will cover the basics of RNA-Seq experimental design and data quality assessment, followed by an overview of data analysis for the detection of differentally expressed genes.

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MPI

This tutorial provides an introduction on how to write a parallel program using MPI and will help researchers write better and portable parallel codes for distributed-memory Linux clusters

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Intro to Pathway Analysis (in person)

Agenda:

   11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview

   12:00 - 1:00 p.m.: Break

   1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro

   2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses

 

 

04/18/2023
Intro to Pathway Analysis (remote)

Agenda:

   11:00 a.m. - 12:00 p.m.: Pathway Analysis Overview

   12:00 - 1:00 p.m.: Break

   1:00 - 2:00 p.m.: Command Line Refresher / OpenOnDemand intro

   2:00 - 2:30 p.m.: Running and Interpreting Pathway Analyses

04/18/2023
RNA-Seq Analysis (Remote and On-Site) 04/11/2023
Intro to Single-cell Genomics (On Site)

This tutorial is a lecture that covers basic experimental design principles as they pertain to single cell genomics.

03/30/2023
Intro to Single-cell Genomics (Remote) 03/30/2023
Advanced Python (On Site)

This session includes efficient data processing with NumPy and Scipy, data visualization, and techniques for using Python to drive parallel supercomputing tasks.

03/28/2023
Advanced Python (Remote) 03/28/2023

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